Publications

F El-Daher, L K Drake, S J Enos, D Wehner, M Westphal, N J Porter, C G Becker, T Becker (2024). Wound closure after brain injury relies on force generation by microglia in zebrafish. bioRxiv.

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Francois El-Daher, Jason J. Early, Claire E. Richmond, Rory Jamieson, Thomas Becker, Catherina G. Becker (2021). Controlled Semi-Automated Lased-Induced Injuries for Studying Spinal Cord Regeneration in Zebrafish Larvae. JOVE-JOURNAL OF VISUALIZED EXPERIMENTS.

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Francois El-Daher, Catherina G. Becker (2020). Neural circuit reorganisation after spinal cord injury in zebrafish. CURRENT OPINION IN GENETICS & DEVELOPMENT.

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Hanne Folz, Carlos A. Nino, Surayya Taranum, Stefanie Caesar, Lorenz Latta, Francois Waharte, Jean Salamero, Gabriel Schlenstedt, Catherine Dargemont (2019). SUMOylation of the nuclear pore complex basket is involved in sensing cellular stresses. JOURNAL OF CELL SCIENCE.

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Jens-Christian Roper, Demosthene Mitrossilis, Guillaume Stirnemann, Francois Waharte, Isabel Brito, Maria-Elena Fernandez-Sanchez, Marc Baaden, Jean Salamero, Emmanuel Farge (2018). The major β-catenin/E-cadherin junctional binding site is a primary molecular mechano-transductor of differentiation <i>in vivo</i>. ELIFE.

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Antoine Basset, Patrick Bouthemy, Jerome Boulanger, Francois Waharte, Jean Salamero, Charles Kervrann (2017). An extended model of vesicle fusion at the plasma membrane to estimate protein lateral diffusion from TIRF microscopy images. BMC BIOINFORMATICS.

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Marco Biondini, Amel Sadou-Dubourgnoux, Perrine Paul-Gilloteaux, Giulia Zago, Melis D. Arslanhan, Francois Waharte, Etienne Formstecher, Maud Hertzog, Jinchao Yu, Raphael Guerois, Alexis Gautreau, Giorgio Scita, Jacques Camonis, Maria Carla Parrini (2016). Direct interaction between exocyst and Wave complexes promotes cell protrusions and motility. JOURNAL OF CELL SCIENCE.

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Andrii Rogov, Marie Irondelle, Fernanda Ramos Gomes, Julia Bode, Davide Staedler, Solene Passemard, Sebastien Courvoisier, Yasuaki Yamamoto, Francois Waharte, Daniel Ciepielewski, Philippe Rideau, Sandrine Gerber-Lemaire, Frauke Alves, Jean Salamero, Luigi Bonacina, Jean-Pierre Wolf (2015). Simultaneous Multiharmonic Imaging of Nanoparticles in Tissues for Increased Selectivity. ACS PHOTONICS.

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Philippe Roudot, Charles Kervrann, Cedric M. Blouin, Francois Waharte (2015). Lifetime estimation of moving subcellular objects in frequency-domain fluorescence lifetime imaging microscopy. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION.

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A. Basset, P. Bouthemy, J. Boulanger, F. Waharte, C. Kervrann, J. Salamero (2015). DETECTION AND ESTIMATION OF MEMBRANE DIFFUSION DURING EXOCYTOSIS IN TIRFM IMAGE SEQUENCES. 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

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Carine Rosse, Catalina Lodillinsky, Laetitia Fuhrmann, Maya Nourieh, Pedro Monteiro, Marie Irondelle, Emilie Lagoutte, Sophie Vacher, Francois Waharte, Perrine Paul-Gilloteaux, Maryse Romao, Lucie Sengmanivong, Mark Linch, Johan Van Lint, Graca Raposo, Anne Vincent-Salomon, Ivan Bieche, Peter J. Parker, Philippe Chavrier (2014). Control of MT1-MMP transport by atypical PKC during breast-cancer progression. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA.

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Nicolas Chenouard, Ihor Smal, Fabrice De Chaumont, Martin Maska, Ivo F. Sbalzarini, Yuanhao Gong, Janick Cardinale, Craig Carthel, Stefano Coraluppi, Mark Winter, Andrew R. Cohen, William J. Godinez, Karl Rohr, Yannis Kalaidzidis, Liang Liang, James Duncan, Hongying Shen, Yingke Xu, Klas E. G. Magnusson, Joakim Jalden, Helen M. Blau, Perrine Paul-Gilloteaux, Philippe Roudot, Charles Kervrann, Francois Waharte, Jean-Yves Tinevez, Spencer L. Shorte, Joost Willemse, Katherine Celler, Gilles P. Van Wezel, Han-Wei Dan, Yuh-Show Tsai, Carlos Ortiz De Solorzano, Jean-Christophe Olivo-Marin, Erik Meijering (2014). Objective comparison of particle tracking methods. NATURE METHODS.

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Cedric Delevoye, Stephanie Miserey-Lenkei, Guillaume Montagnac, Floriane Gilles-Marsens, Perrine Paul-Gilloteaux, Francesca Giordano, Francois Waharte, Michael S. Marks, Bruno Goud, Graca Raposo (2014). Recycling Endosome Tubule Morphogenesis from Sorting Endosomes Requires the Kinesin Motor KIF13A. CELL REPORTS.

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Charles Kervrann, Philippe Roudot, Francois Waharte (2014). APPROXIMATE BAYESIAN COMPUTATION, STOCHASTIC ALGORITHMS AND NON-LOCAL MEANS FOR COMPLEX NOISE MODELS. 2014 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP).

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Giulia Bertolin, Rosa Ferrando-Miguel, Maxime Jacoupy, Sabine Traver, Karl Grenier, Andrew W. Greene, Aurelien Dauphin, Francois Waharte, Aurelien Bayot, Jean Salamero, Anne Lombes, Anne-Laure Bulteau, Edward A. Fon, Alexis Brice, Olga Corti (2013). The TOMM machinery is a molecular switch in PINK1 and PARK2/PARKIN-dependent mitochondrial clearance. AUTOPHAGY.

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David Umlauf, Jacques Bonnet, Francois Waharte, Marjorie Fournier, Matthieu Stierle, Benoit Fischer, Laurent Brino, Didier Devys, Laszlo Tora (2013). The human TREX-2 complex is stably associated with the nuclear pore basket. JOURNAL OF CELL SCIENCE.

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Agnes Miermont, Francois Waharte, Shiqiong Hu, Megan Nicole McClean, Samuel Bottani, Sebastien Leon, Pascal Hersen (2013). Severe osmotic compression triggers a slowdown of intracellular signaling, which can be explained by molecular crowding. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA.

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Philippe Roudot, Charles Kervrann, Jerome Boulanger, Francois Waharte (2013). NOISE MODELING FOR INTENSIFIED CAMERA IN FLUORESCENCE IMAGING: APPLICATION TO IMAGE DENOISING. 2013 IEEE 10TH INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI).

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Denis Fortun, Chen Chen, Perrine Paul-Gilloteaux, Francois Waharte, Jean Salamero, Charles Kervrann (2013). CORRELATION AND VARIATIONAL APPROACHES FOR MOTION AND DIFFUSION ESTIMATION IN FLUORESCENCE IMAGING. 2013 PROCEEDINGS OF THE 21ST EUROPEAN SIGNAL PROCESSING CONFERENCE (EUSIPCO).

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A. Chessel, F. Waharte, J. Salamero, C. Kervrann (2013). A MAXIMUM LIKELIHOOD METHOD FOR LIFETIME ESTIMATION IN PHOTON COUNTING-BASED FLUORESCENCE LIFETIME IMAGING MICROSCOPY. 2013 PROCEEDINGS OF THE 21ST EUROPEAN SIGNAL PROCESSING CONFERENCE (EUSIPCO).

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Catherine Angenieux, Francois Waharte, Alexandre Gidon, Francois Signorino-Gelo, Virginie Wurtz, Rim Hojeij, Fabienne Proamer, Christian Gachet, Alain Van Dorsselaer, Daniel Hanau, Jean Salamero, Henri De La Salle (2012). Lysosomal-Associated Transmembrane Protein 5 (LAPTM5) Is a Molecular Partner of CD1e. PLOS ONE.

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J. Floury, M. -N. Madec, F. Waharte, S. Jeanson, S. Lortal (2012). First assessment of diffusion coefficients in model cheese by fluorescence recovery after photobleaching (FRAP). FOOD CHEMISTRY.

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Alexandre Gidon, Sabine Bardin, Bertrand Cinquin, Jerome Boulanger, Francois Waharte, Laurent Heliot, Henri De La Salle, Daniel Hanau, Charles Kervrann, Bruno Goud, Jean Salamero (2012). A Rab11A/Myosin Vb/Rab11-FIP2 Complex Frames Two Late Recycling Steps of Langerin from the ERC to the Plasma Membrane. TRAFFIC.

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Philippe Roudot, Charles Kervrann, Francois Waharte, Jerome Boulanger (2012). LIFETIME MAP RECONSTRUCTION IN FREQUENCY-DOMAIN FLUORESCENCE LIFETIME IMAGING MICROSCOPY. 2012 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP 2012).

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Philippe Roudot, Charles Kervrann, Francois Waharte (2012). LIFETIME ESTIMATION OF MOVING VESICLES IN FREQUENCY-DOMAIN FLUORESCENCE LIFETIME IMAGING MICROSCOPY. 2012 9TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI).

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C. Rosse, P. Chavrier, E. Lagoutte, M. Irondelle, M. Nourieh, F. Waharte, P. Monteiro, L. Sengmanivong, P. Paul-Gilloteaux, M. Romao, L. Fuhrmann, J. Van Lint, G. Raposo, A. Vincent-Salomon, I. Bieche, P. Parker (2012). Atypical PKC is involved in breast tumor cell invasion through the control of MT1-MMP trafficking.. MOLECULAR BIOLOGY OF THE CELL.

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Svetlana Dokudovskaya, Francois Waharte, Avner Schlessinger, Ursula Pieper, Damien P. Devos, Ileana M. Cristea, Rosemary Williams, Jean Salamero, Brian T. Chait, Andrej Sali, Mark C. Field, Michael P. Rout, Catherine Dargemont (2011). A Conserved Coatomer-related Complex Containing Sec13 and Seh1 Dynamically Associates With the Vacuole in <i>Saccharomyces cerevisiae</i>. MOLECULAR & CELLULAR PROTEOMICS.

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Mercedes Rey, Marie Irondelle, Francois Waharte, Floria Lizarraga, Philippe Chavrier (2011). HDAC6 is required for invadopodia activity and invasion by breast tumor cells. EUROPEAN JOURNAL OF CELL BIOLOGY.

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S. Daddi Oubekka, R. Briandet, F. Waharte, M. -P. Fontaine-Aupart, K. Steenkeste (2011). Image-based Fluorescence Recovery After Photobleaching (FRAP) to dissect vancomycin diffusion-reaction processes in <i>Staphylococcus aureus</i> biofilms. CLINICAL AND BIOMEDICAL SPECTROSCOPY AND IMAGING II.

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Nadia Bourouina, Julien Husson, Francois Waharte, Robert B. Pansu, Nelly Henry (2011). Formation of specific receptor-ligand bonds between liquid interfaces. SOFT MATTER.

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Arnaud Bridier, Ekaterina Tischenko, Florence Dubois-Brissonnet, Jean-Marie Herry, Vincent Thomas, Samia Daddi-Oubekka, Francois Waharte, Karine Steenkeste, Marie-Pierre Fontaine-Aupart, Romain Briandet (2011). Deciphering Biofilm Structure and Reactivity by Multiscale Time-Resolved Fluorescence Analysis. BACTERIAL ADHESION: CHEMISTRY, BIOLOGY AND PHYSICS.

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Francois Waharte, Karine Steenkeste, Romain Briandet, Marie-Pierre Fontaine-Aupart (2010). Diffusion Measurements inside Biofilms by Image-Based Fluorescence Recovery after Photobleaching (FRAP) Analysis with a Commercial Confocal Laser Scanning Microscope. APPLIED AND ENVIRONMENTAL MICROBIOLOGY.

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Stephanie Miserey-Lenkei, Francois Waharte, Annick Boulet, Marie-Helene Cuif, Danielle Tenza, Amed El Marjou, Gracxa Raposo, Jean Salamero, Laurent Heliot, Bruno Goud, Solange Monier (2007). Rab6-interacting protein 1 links Rab6 and Rab11 function. TRAFFIC.

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Corentin Spriet, Dave Trinel, Francois Waharte, Didier Deslee, Bernard Vandenbunder, Jacques Barbillat, Laurent Heliot (2007). Correlated fluorescence lifetime and spectral measurements in living cells. MICROSCOPY RESEARCH AND TECHNIQUE.

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F Waharte, C Spriet, L Héliot (2006). Setup and characterization of a multiphoton FLIM instrument for protein-protein interaction measurements in living cells. CYTOMETRY PART A.

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F Waharte, CM Brown, S Coscoy, E Coudrier, F Amblard (2005). A two-photon FRAP analysis of the cytoskeleton dynamics in the microvilli of intestinal cells. BIOPHYSICAL JOURNAL.

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S Coscoy, F Waharte, A Gautreau, M Martin, E Huguet, J De May, D Louvard, P Mangeat, M Arpin, F Amblard (2004). Two-photon FRAP experiments and simulations to study the dynamics of cytoskeletal proteins.. BIOPHOTONICS NEW FRONTIER: FROM GENOME TO PROTEOME.

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S Coscoy, F Waharte, A Gautreau, M Martin, D Louvard, P Mangeat, M Arpin, F Amblard (2002). Molecular analysis of microscopic ezrin dynamics by two-photon FRAP. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA.

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S Coscoy, F Waharte, C Brown, E Coudrier, M Arpin, P Mangeat, D Louvard, F Amblard (2002). Dynamics of cytoskeletal proteins revealed by two-photon photobleaching: Experimental results and theoretical tools. BIOPHYSICAL JOURNAL.

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S Coscoy, F Waharte, C Brown, M Arpin, P Mangeat, E Coudrier, F Amblard (2001). Cytoskeletal dynamics of the apical membrane of epithelial cells: A two-photon FRAP study of the brush border.. BIOPHYSICAL JOURNAL.

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M Beccaria, M Bernardini, S Braccini, C Bradaschia, G Cagnoli, C Casciano, G Cella, E Cuoco, V Dattilo, G De Carolis, R De Salvo, A Di Virgilio, GT Feng, I Ferrante, F Fidecaro, F Frasconi, A Gaddi, L Gammaitoni, A Gennai, A Giazotto, L Holloway, J Kovalik, P La Penna, G Losurdo, S Malik, S Mancini, F Marchesoni, J Nicolas, F Palla, HB Pan, F Paoletti, A Pasqualetti, D Passuello, R Poggiani, P Popolizio, M Punturo, F Raffaelli, V Rubino, R Valentini, A Vicere, F Waharte, Z Zhang (1998). The creep problem in the VIRGO suspensions: a possible solution using Maraging steel. NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT.

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M Beccaria, M Bernardini, E Bougleux, S Braccini, C Bradaschia, C Casciano, G Cella, E Cucco, E DAmbrosio, G DeCarolis, R DelFabbro, R DeSalvo, A DiVirgilio, I Ferrante, F Fidecaro, R Flaminio, A Gaddi, A Gennai, G Gennaro, A Giazotto, L Holoway, P LaPenna, G Losurdo, S Malik, S Mancini, J Nicolas, F Palla, HB Pan, F Paoletti, A Pasqualetti, D Passuello, R Poggiani, P Popolizio, F Raffaelli, A Vicere, F Waharte, Z Zhang (1997). Extending the VIRGO gravitational wave detection band down to a few Hz: metal blade springs and magnetic antisprings. NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT.

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